The Laboratory of biological electron microscopy and structural biology
(dr. fei sun’s lab)
1.Chen Y., Zhang Y., Zhang K.*, Deng Y., Zhang F.* and Sun F.* (2016), FIRT: filtered iterative reconstruction technique with information restoration. Journal of Structural Biology XXX(X) : XXX-XXX. doi: 10.1016/j.jsb..
2.Deng Y., Chen Y., Zhang Y., Wang S., Zhang F.* and Sun F.* (2016), ICON: 3D reconstruction with ‘missing-information’ restoration in biological electron tomography. Journal of Structural Biology XXX(X) : XXX-XXX. doi: 10.1016/j.jsb..
3.Zhang J., Ji G., Huang X., Xu W.* and Sun F.* (2016), An improved cryo-FIB method for fabrication of frozen hydrated lamella. Journal of Structural Biology 194(2): 218-223. doi: 10.1016/j.jsb..
4.Li W., Ding W., Ji G., Zhang J. and Sun F.* (2016), Three-dimensional visualization of arsenic stimulated mouse liver sinusoidal by FIB-SEM approach. Proten Cell 7(3) : 227-232. doi: -016-0246-9.
5.Shan H., Wang Z., Zhang F., Xiong Y., Yin C.C.* and Sun F.* (2016), A local-optimization refinement algorithm in single particle analysis for macromolecular complex with multiple rigid modules. Proten Cell 7(1): 46-62. doi:10.-015-0229-2.
6.Mao G., Zhao Y., Kang X., Li Z., Zhang Y., Wang X., Sun F., Sankaran, K., and Zhang, X.C. (2016), Crystal structure of E. coli lipoprotein diacylglyceryl transferase. Nature communications 7, 10198.
7.Cui Y., Zhao S., Wang J., Gao B., Fan Q., Sun F. and Zhou B. (2015), A novel mitochondrial carrier protein Mme1 acts as a yeast mitochondrial magnesium exporter. Biochim Biophys Acta. 1854(3): 724-32. doi:10.1016/j.bbamcr..
8.Ma D.K., Li Z., Lu A.Y., Sun F., Chen S., Rothe M., Menzel R., Sun F. and Horvitz HR.* (2015), Acyl-CoA Dehydrogenase Drives Heat Adaptation by Sequestering Fatty Acids. Cell, 161(5) : 1152-63. doi: 10.1016/j.cell..
9.Gao B., Chen R., Liu X., Dai J. and Sun F.* (2015), Expression, purification, crystallization and crystallographic study of the Aspergillus terreus acromatic prenyltransferase AtaPT. Acta Crystallogr F Struct Biol Commun. F71: 889-894. doi: 10.0X.
10.Sun F. (Sun Fang), Pang X., Xie T., Zhai Y., Wang G.G.* and Sun F.*
(2015), BrkAutoDisplay: functional display of multiple exogenous proteins on the surface of Escherichia coli by using BrkA autotransporter. Microbial Cell Factories. 14: 129. doi: 10.-015-0316-3.
11.Liu B., Xue Y., Zhao W., Chen Y., Fan C., Gu L., Zhang Y., Sun L., Huang X., Ding W., Sun F., Ji W.* and Xu T.* (2015), Three-dimensional super-resolution protein localization correlated with vitrified cellular context. Sci Rep 5, 13017. doi: 10.1038/srep13017.
12.Han R., Wang L., Liu Z., Sun F.* and Zhang F.* (2015), A novel fully automatic scheme for fiducial marker-based alignment in electron tomography. Journal of Structural Biology 192: 403-17. doi: 10.1016/j.jsb..
(The program markerauto can be downloaded from /)
13.Pang X., Fan J., Zhang Y., Zhang K., Gao B., Ma J., Li J., Deng Y., Zhou Q., Egelman E.H., Hsu V.W.* and Sun F.* (2014), A PH Domain in ACAP1 Possesses Key Features of the BAR Domain in Promoting Membrane Curvature. Developmental Cell, 31(1) : 73-86. doi: 10.1016/j.devcel.. [] This paper was commented and previewed in the same issue by Haucke and
colleagues (). [This research has been recommended In , 17 Nov 2014; DOI: 10.3410/f.3501476. /#eval]
14.Xu Y., Li H., Jin YH., Fan J.* and Sun F.* (2014), Dimerization interface of 3-hydroxyacyl-CoA dehydrogenase tunes the formation of its catalytic intermediate. PLOS one. 9(4): e95965. doi:10.1371/journal.pone.0095965.
15.Ma J. and Sun F.* (2014), Expression, purification, crystallization and preliminary crystallographic study of the cytoplasmic domain of the mitochondrial dynamics protein MiD51. Acta Crystallographica Section F. F70: 596-599. doi:10.0X.
16.Sun F., Li J. and Chen C.* (2014), Puzzle out the regulation mechanism of PI4KIIα activity. Sci China Life Sci. doi: 10.-014-4656-8.
17.Zhou Q., Li J., Yu H., Zhai Y., Gao Z., Liu Y., Pang X., Zhang L., Schulten K., Sun F.* and Chen C.* (2014), Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα. Nature Communications, 5:3552. doi:10.1038/ncomms4552. [] [This research has been recommended In , 18 Jul 2014; DOI: 10.3410/f.3497426. /#eval]
18.Qiu B., Zhang K., Wang S., Sun F.* (2014). C-terminal motif within Sec7 domain regulates guanine nucleotide exchange activity via tuning protein conformation. Biochem Biophys Res Commun, 446(1) : 380-386. doi: 10.1016/j.bbrc..
19.Han R., Zhang F., Wan X., Fernandez J.J., Sun F. and Liu Z. (2014). A marker-free automatic alignment method based scale-invariant features. Journal of Structural Biology, 186 : 167-180. doi: 10.1016/j.jsb..
20.Cheng, L., Huang, X., Li, X., Xiong, W., Sun, W., Yang, C., Zhang, K., Wang, Y., Liu, H., Huang, X., Ji, G., Sun F., Zheng, C.* and Zhu, P.* (2014). Cryo-EM structures of two bovine adenovirus type 3 intermediates. Virology, 450-451 :
21.Zhang, Y., and Sun F.* (2013). Electron Microscopy Reconstruction of Helical Assemblies. Acta Biophys Sin, 29: 879-898.
22.Sun F.*, Zhou Q., Pang X., Xu Y. and Rao Z. (2013), Revealing various coupling of electron transfer and proton pumping in mitochondrial respiratory chain. Current Opinion in Structural Biology, 23: 526-538. doi: 10.1016/j.sbi..
23.Zhang K., Wang L., Liu Y., Chan K.Y., Pang X., Schulten K., Dong Z. and Sun F.* (2013), Flexible interweaved termini determine the thermal stability of thermosomes. Protein Cell, 4(6): 432-444. doi: 10.-013-3026-9.
24.Zhang Y., Wang W., Chen J., Zhang K., Gao F., Gao B., Zhang S., Dong M., Besenbacher F., Gong W., Zhang M., Sun F.* and Feng W.* (2013), Structural insights into the intrinsic self-assembly of Par-3 N-terminal domain. Structure, 21(6):997-1006. doi: 10.1016/j.str..
25.Lu J., Zhai Y. and Sun F.* (2013), Research of Mitochondrial Calcium Transportation. ACTA BIOPHYSICA SINICA, 29(3): 167-180.
26.Xu Y. and Sun F.* (2013), Purification, crystallization and preliminary crystallographic analysis of 3-hydroxyacyl-CoA dehydrogenase from Caenorhabditis elegans. Acta Crystallographica Section F, F69: 515-519. doi:10..
27.Wu L., Zhai Y., Lu J., Wang Q. and Sun F.* (2013), Expression, purification and preliminary characterization of glucagon receptor extracellular domain. Protein Expression and Purification, 89: 232-240. doi: 10.1016/j.pep..
28.Quinlan R., Zhang Y., Lansbury A., Williamson I., Pohl E.* and Sun F.* (2013), Changes in the quaternary structure and function of MjHSP16.5 attributable to deletion of the I-X-I motif and introduction of the substitution, R107G in the alpha-crystallin domain. Philosophical Transactions of The Royal Society B, 368. doi:10.1098/rstb..
29.Wang X., Xu F., Liu J., Gao B., Liu Y., Zhai Y., Ma J., Zhang K., Baker T.S., Schulten K., Zheng D.*, Pang H.* and Sun F.* (2013), Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. PLoS Pathogens, 9(1): e1003132. doi: 10.1371/journal.ppat.1003132. [][][]
30.Zhang S., Andreasen M., Nielsen J.T., Liu L., Nielsen E.H., Song J., Ji G., Sun F., Skrydstrup T., Besenbacher F., Nielsen N.C., Otzen D.E and Dong M.* (2013), Coexistence of ribbon and helical fibrils originating from hIAPP20-29 revealed by quantitative nanomechanical atomic force microscopy. PNAS, doi:10.1073/pnas..
31.Wang L., Li Q., Wu L., Liu S., Zhang Y., Yang X., Zhu P., Zhang H., Zhang K., Lou J., Liu P., Tong L.*, Sun F.* and Fan Z.* (2013), Identification of SERPINB1 as a physiological inhibitor of human granzyme H. The Journal of Immunology, 190(3):1319-30. doi:10.4049/jimmunol.1202542.
32.Yang S., Liu X., Li, X., Sun S.F., Sun F., Fan B., and Zhao S.* (2013), MicroRNA-124 reduces caveolar density by targeting caveolin-1 in porcine kidney epithelial PK15 cells. Molecular and cellular biochemistry 384, 213-219.
33.Wang G., Zhang F., Fan L., Sun F. and Liu, Z. (2013) Contrast Transfer Function Correction Model Based on Sine and Gaussian Modulation and Spline Interpolation. Journal of Computer Research and Development 50, 808-814.
34.Wang G., Zhang F., Fan L., Sun F. and Liu, Z. (2013) A fast calculation strategy of density function in ISAF reconstruction algorithm. Scientia Sinica Informationis 43, 584-598.
35.Zhao Y., Zhao H., Miao L., Wang L., Sun F. and Zhang H. (2012), The p53-induced gene Ei24 is an essential component of the basal autophagy pathway. Journal of Biological Chemistry, 287(50):42053-63.
36.Wang S. and Sun F.* (2012), Dynactin is an indispensable helper for dynein’s function in intracellular motility. ACTA BIOPHYSICA SINICA, 28(10):785-793.
37.Bai M., Pang X., Lou J., Zhou Q., Zhang K., Ma J., Li J., Sun F.* Hsu V.* (2012), Mechanistic insights into regulated cargo binding by ACAP1.
Journal of Biological Chemistry, 287: .
38.Hu J., Sun L., Shen F., Chen Y., Hua Y., Liu Y., Zhang M., Hu Y., Wang Q., Xu W., Sun F., Ji J., Murray J., Carr A., Kong D.* (2012), The Intra-S phase checkpoint targets Dna2 to prevent stalled replication forks from reversing. Cell, 149: .
39.Yang C., Ji G., Liu H., Zhang K., Liu G., Sun F., Zhu P.*, Cheng L*. (2012), Cryo-EM structure of a transcribing cypovirus. PNAS, 109(16): .
40.Wang G., Zhang F., Sun F., Liu Z. (2012), An accelerated ISAF algorithm with the fast mapping strategy. Journal of Computers, 7(2): 528-533.
41.Guo H., Yuan X., Liu J., Shan G., Chi X., Sun F. (2012), Interference microscopy volume illustration for biomedical data. Pacific Visualization Symposium (PacificVis), 2012 IEEE. 177-184. doi: 10.1109/PacificVis..
42.Wang L., Zhang K., Wu L., Liu S., Zhang H., Zhou Q., Tong L., Sun F.* and Fan Z.*. (2012), Structural Insights into the substrate specificity of human granzyme H - the functial roles of a novel RKR motif. The Journal of Immunology, 188(2): 765-73.
43.Wang X., Wang L., Wang Xi., Sun F.* and Wang C.C.*.(2012), Structural insights into the peroxidase activity and inactivation of human peroxiredoxin 4. Biochem. J.,441: 113-118.
44.Cheng L., Sun J., Zhang K., Mou Z., Huang X., Ji G., Sun F., Zhang J.*, Zhu P.* (2011), Atomic model of a cypovirus built from cryo-EM structure provides insight into the mechanism of mRNA capping. PNAS, 108(4):.
45.Wang L., Zhang K., Fan Z., Dong Z., Sun F.* (2011), Substrate binding properties of thermosome ATcpn-beta from Acidianus Tengchongensis. Progress in Biochemistry and Biophysics, 38(2):151-158.
46.Zhai Y., Zhang K., Huo Y., Zhu Y., Zhou Q., Lu J., Black I., Pang X., Roszk A.W., Zhang X., Isaacs N.W., Sun F.* (2011), Autotransporter passenger domain secretion requires a hydrophobic cavity at the extracellular entrance of the beta-domain pore. Biochem. J. , 435:577-587. (This paper was featured as a key scientific article by ))
47.Chu Q., Zhang K., Wan X., Zhang C., Zhang Y., Zhang G., Shen B., Lu X., Zhao K.,Chu X., Zhang F.*, Sun F.* (2011), ATOM1.0 : A GPU Powered Package for Electron Tomography Reconstruction. ACTA BIOPHYSICA SINICA, 27(3):231-241. (The software ATOM1.0 could be found )
48.Zheng X., Guo J., Xu L., Li H., Zhang D., Zhang K.,Sun F., Wen T., Liu S., Pang H.* (2011), Crystal Structure of a Novel Esterase Rv0045c from Mycobacterium tuberculosis. PLoS ONE, 6(5): e20506. doi:10.1371/journal.pone.0020506
49.Wan X., Zhang F., Chu Q., Zhang K., Sun F., Yuan B., Liu Z.* (2011), Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography. Journal of Structural Biology , 175(3):277-87. doi:10.1016/j.jsb.
50.Zhou Q., Zhai Y., Lou J., Liu M., Pang X. and Sun F.* (2011), Thiabendazole inhibits ubiquinone reduction activity of mitochondrial respiratory complex II via a water molecule mediated binding feature. Protein & Cell, 2(7):531-542, doi:10.-011-1079-1 (cover story).
51.Li M., Xu G.*, Sorzano, O.S.C., Sun F. and Bajaj L.C. (2011), Single-particle reconstruction using L2-gradient flow. Journal of Structural Biology,176:259-267. doi:10.1016/j.jsb..
52.Sun Fei* and Wang Xue. (2011), Application and aspect of cryo-electron microscopy for the structural study of membrane proteins. Chinese Bulletin of Life Sciences, 23(11):.
53.Chen Shaohong, Pang Xiaoyun and Sun Fei*. (2011), Mitochondrial movement and its related cytoskeletons and proteins. ACTA BIOPHYSICA SINICA, 27(12):.
54.Wang G., Zhang F., Fan L., Sun F., Liu Y. (2011), Analysis and solution of complexity of basis function in ISAF reconstruction algorithm. Journal of Computer-Aided Design & Computer Graphics. 23 (7) : .
55.Li Z., Zhai Y., Fang J., Zhou Q., Geng Y., Sun F.* (2010), Purification, crystallization and preliminary crystallographic analysis of very long chain Acyl-CoA dehydrogenase from Caenorhadbitis elegans. Acta Crystallographica Section F, F66: 426-430.
56.Wang L., Hu Z., Luo Y., Huo Y., Ma Q., He Y., Zhang Y., Sun F.*, Dong Z.* (2010), Distinct symmetry and limited peptide refolding activity of the thermosomes from the acidothermophilic archaea Acidianus tengchongensis S5T, Biochem Biophys Res Commun, 393: 228-234.
57.Li Z., Zhang K., Zhai Y., Zhou Q., Geng Y., Sun F.* (2010), Cloning, Expression, Purification and Preliminary Crystallographic Analysis of Caenorhabditis elegnas Enoyl-CoA Hydratase. Acta Biophysica Sinica, 26(1):37-48.
58.Hu Z., Tian X., Zhai Y., Xu W., Zheng D., Sun F.* (2010), Cryo-Electron Microscopy Reconstructions of Two Types of Wild Rabbit Hemorrhagic Disease Viruses Characterized the Structural Features of Lagovirus. Protein & Cell, 1(1):48-58. (Cover story)
59.Zhou Q., Sun J., Zhai Y., Sun F.* (2010). Prokaryotic Expression of Active Mitochondrial Uncoupling Protein 1. Progress in Biochemistry and Biophysics, 37(1): 56~62.
60.Li S., Zhao Q., Zhou Q., Unno H., Zhai Y., Sun F.*(2010). The Role and Structure of Carboxyl-terminal Domain of the Human Voltage-gated Proton Channel HV1. Journal of Biological Chemistry, 285 (16): .
61.Zhang S., Zhang K., Chen X., Chu X., Sun F.*, Dong Z. (2010), Five mutations in N-terminus confer thermostability on mesophilic xylanase, BBRC, 395: 200-206.
62.Lu B., Zhai Y., Wu C., Pang X., Xu Z. and Sun F.* (2010), Expression, purification and preliminary biochemical studies of the N-terminal domain of leucine-rich repeat kinase 2, Biochimica et Biophysica Acta, -1784.
63.Zhang K., Zhang Y., Hu Z., Gang J. and Sun F.* (2010), Development and Frontier of Electron Microscopy 3D Reconstruction. ACTA BIOPHYSICA SINICA, 26(7): 533-559. (cover story)
64.Zhang Y, Liu D, Chen X, Li J, Li L, Bian Z, Sun F., Lu J, Yin Y, Cai X, Sun Q, Wang K, Ba Y, Wang Q, Wang D, Yang J, Liu P, Xu T, Yan Q, Zhang J, Zen K, Zhang CY. (2010). Secreted monocytic miR-150 enhances targeted endothelial cell migration. Mol. Cell, 39(1):133-44.
65.Hu YW, Hu ZJ, Zhang K, Wang L, Zhai Y, Zhou QJ, Lander G, Zhu J, He YZ, Pang XY, Xu W, Bartlam M, Dong ZY, Sun F.*. (2010). Crystal structure of group II chaperonin in the open state. Structure, 18(10): . (cover story)
66.Ma J, Sun F.* (2010). Translocation of Mitochondrial Proteins. ACTA BIOPHYSICA SINICA, 26(10): 880-893.
67.Xu L., Guo J., Zheng X., Wen T., Sun F., Liu, S., and Pang, H.* (2010). Crystallization and preliminary X-ray analysis of a novel esterase Rv0045c from Mycobacterium tuberculosis. Acta Crystallogr Sect F Struct Biol Cryst Commun 66, .
68.Zhang K,, Zhang C,, Sun F*. (2009) Disclosing the Structure and Function of Translation Machine - Introduction of the Noble Prize in Chemistry 2009. Acta Biophysica Sinica, 25(5):325-334.
69.Wu L., Wang L., Hua G., Liu K., Yang X., Zhai Y., Bartlam M., Sun F*. and Fan Z.* (2009) Structural Basis for Proteolytic Specificity of the Human Apoptosis-Inducing Granzyme M, The Journal of Immunology, 183, 421-9.
70.Sun S.，Zhang K., Xu W.，Wang G.，Chen J. and Sun F*. (2009) 3D Structural Investigation of Caveolae From Porcine Aorta Endothelial Cell by Electron Tomography, Progress in Biochemistry and Biophysis, 36(6), 729-35.
71.Sun, F.*#, Zhou, Q. J., Sun, J., Zhai, Y. J. & Rao, Z. H. (2008) Structure of mitochondrial respiratory membrane protein complexes, Chinese Bulletin of Life Sciences. 20.
72.Wang, L., Wang, L., Vavassori, S., Li, S., Ke, H., Anelli, T., Degano, M., Ronzoni, R., Sitia, R., Sun, F.* & Wang, C. C.* (2008) Crystal structure of human ERp44 shows a dynamic functional modulation by its carboxy-terminal tail, EMBO Rep. 9, 642-7.
73.Chen, J., Li, W., Wang, M., Zhu, G., Liu, D., Sun, F., Hao, N., Li, X., Rao, Z. & Zhang, X. C. (2008) Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi, Protein Sci. 17, 1362-73.
74.Huo X, Su D, Wang A, Zhai Y, Xu J, Li X, Bartlam M, Sun F*, Rao Z. 2007. Preliminary molecular characterization and crystallization of mitochondrial respiratory complex II from porcine heart , FEBS JOURNAL, 274(6):
75.Zheng, W., Sun, F., Bartlam, M., Li, X., Li, R. & Rao, Z. (2007) The crystal structure of human isopentenyl diphosphate isomerase at 1.7 a resolution reveals its catalytic mechanism in isoprenoid biosynthesis, J Mol Biol. 366, 1447-58.
76.Su D, Lou Z, Sun F, Zhai Y, Yang H, Zhang R, Joachimiak A, Zhang XC, Bartlam M, Rao Z. 2006. Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10. J Virol. 80(16):7902-8.
77.Xu X, Zhai Y, Sun F, Lou Z, Su D, Xu Y, Zhang R, Joachimiak A, Zhang XC, Bartlam M, Rao Z. 2006. New Antiviral Target Revealed by the Hexameric Structure of Mouse Hepatitis Virus Nonstructural Protein nsp15. J Virol. 80(16):7909-17.
78.Li X, Liu X, Sun F, Gao J, Zhou H, Gao GF, Bartlam M, Rao Z. 2006. Crystal structure of the N-terminal SH3 domain of mouse betaPIX, p21-activated kinase-interacting exchange factor. Biochem Biophys Res Commun. 339(1):407-14.
79.孙飞#，徐建兴，饶子和.2005.膜蛋白三维结构研究的新突破－线粒体呼吸链膜蛋白复合物II结构解析.中国科学院院刊. 2005（5）：381－384
80.Zhai Y#, Sun F#, Li X, Pang H, Xu X, Bartlam M & Rao Z. 2005. Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer. Nat. Struct. Mol. Biol. 12(11): 980－986
81.Sun F#, Huo X, Zhai Y, Wang A, Xu J, Su D, Bartlam M& Rao Z. 2005. Crystal structure of mitochondrial respiratory membrane protein complex II. Cell, 121: .
82.Shi N, Ye S, Bartlam M, Yang M, Wu J, Liu Y, Sun F, Han X, Peng X, Qiang B, Yuan J & Rao Z. 2004. Structural Basis for the Specific Recognition of RET by the Dok1 Phosphotyrosine Binding Domain. J Biol Chem., 279(6): 4962-9
83.Shi N, Ni M, Yang M, Wu J, Peng Y, Gao F, Sun F, Peng X, Qiang B, Rao Z & Yuan J. 2004. Expression, crystallization and preliminary X-ray studies of the recombinant PTB domain of mouse dok-1 protein. Acta Cryst., D60(2): 334-336
84.Sun F#, Li P, Ding Y, Wang L, M Bartlam, Shu C, Shen B, Jiang H, Li S & Rao Z. 2003. Desian and Structure Based Study of New Potential FKBP12 Inhibitors. Biophysical Journal, 85 (5): .
85.Ding Y, Li S, Li XF, Sun F, Liu JY, Zhao NM & Rao Z. 2003. Site-directed Mutagenesis and Preliminary X-ray Crystallographic Studies of the Tabtoxin Resistance Protein. Protein and Peptide Letters, 10(3): 255-263
86.Lin W, Sun F & Rao Z 2003. A Statistical Analysis of Protein-Protein Interaction with Knowledge-Based Potential at Residue Level. Tsinghua Science and Technology, 8(4): 402-406
87.Li T, Sun F, Ji X, Feng Y & Rao Z. 2003. Structure Based Hyperthermostability of Archaeal Histone HPhA from Pyrococcus horikoshii. J Mol Biol., 325:
88.He H, Ding Y, Bartlam M, Sun F, Le Y, Qin X, Tang H, Zhang R, Joachimiak A, Liu J, Zhao N&Rao Z. 2003. Crystal Structure of Tabtoxin Resistance Protein Complexed with Acetyl Coenzyme A Reveals the Mechanism for β-Lactam Acetylation. J Mol Biol., 325(5):
89.Li T, Ji X, Sun F, Gao R, Cao S, Feng Y & Rao Z. 2002. Crystallization and preliminary X-ray analysis of recombinant histone HphA from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Acta Cryst. D58: 870-871
90.Lin W, Sun F* & Rao Z. 2002. Tri-residue contact potential: a new knowledge-based energetic method. Progress in Natural Science, 12(11): 826-840
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